Bioinformatics Through
Natural Conversation
Transform complex genomics data into biological insights without writing a single line of code. Pipette understands your research goals and executes comprehensive analyses automatically.
Research-Grade Analysis Without Programming
Professional bioinformatics tools with the simplicity of natural language
Quality Control & Preprocessing
Automatic adapter trimming, quality filtering, and contamination screening with comprehensive QC reports.
Statistical Analysis
DESeq2, edgeR, and limma pipelines with automatic batch effect correction and multiple testing adjustment.
Visualization Suite
Publication-quality heatmaps, volcano plots, PCA, t-SNE, and UMAP with customizable parameters.
Pathway & Network Analysis
GSEA, GO enrichment, KEGG pathway mapping, and protein interaction networks with STRING.
Multi-Omics Integration
Combine RNA-seq, ChIP-seq, ATAC-seq, and proteomics data with MOFA or mixOmics.
Reproducible Reports
Auto-generated methods sections with software versions and parameters. Export as notebooks.
Comprehensive Analysis Pipelines
Trusted workflows with validated tools and publication-ready outputs
RNA-seq Analysis
Differential expression, transcript quantification, splicing analysis, and fusion detection.
Single-Cell RNA-seq
Cell clustering, annotation, trajectory inference, and RNA velocity analysis.
ChIP/ATAC-seq
Peak calling, motif discovery, chromatin accessibility, and differential binding.
Variant Calling
SNP/Indel discovery, variant annotation, and functional prediction.
GWAS Analysis
Association testing, population stratification, and polygenic risk scores.
Alternative Splicing
Detect differential splicing events, isoform switching, and splice junction analysis.
Frequently Asked Questions
Everything you need to know about using Pipette.bio
What is Pipette.bio?
Pipette.bio is a conversational AI agent for bioinformatics. It comes pre-loaded with open-source tools for NGS, genomics, and transcriptomics. You can analyze data and generate reproducible results without coding.
Where is my data stored?
Your files are uploaded to your private S3 bucket and processed in a secured environment. All data remains confidential and isolated.
How is reproducibility ensured?
Every analysis records its full data lineage: inputs, parameters, software versions, and outputs. You can download complete scripts to reproduce results.
Do I need to install anything?
No. Pipette runs entirely in your browser. Just log in, upload your data, and start your analysis through natural conversation.
Join the Early Access Program
Get free access during our beta period and shape the future of bioinformatics